I've never made my own dough, but when I buy frozen dough in the freezer section, it's always inactivated. I have to let it rise. :) I would say that you should probably freeze first, then let it rise.
Actually, nevermind. Here's what I found after a quick google: breadbaking.about.com/od/beginnerbasics/ht
Basically, let it rise, punch it down, shape it, freeze it, and let it rise again when it's time to bake!